These letters are principally to his brother John Cleaves Short, on personal, family, and general topics.

These letters concern various scientific subjects, such as fishes, insects, snakes, mice, fossils, and mosses. Other subjects include learned institutions, notably the Smithsonian Institution and the Academy of Natural Sciences of Philadelphia, and men of science. Correspondents include S. S. Haldeman, Walter J. Hoffman, Spencer F. Baird, Edward D. Cope, and Leo Lesquereux.

The largest portion of correspondence is with Charles Edwin Bessy on botanical matters, including botanical publications in the United States and Europe, and plants and shell specimens.

These papers include letters on natural history, metals and mineralogy, botany, insects, the geological survey of New York, and analyses of distilled liquors in the cause of temperance.

This is primarily a collection of letters, with some additional documents, concerning Young's interest in botany, geology, mineralogy, and natural history. There is information about Bowdoin College, where he studied under Parker Cleaveland. There is also much on the natural history of Maine, where he was the State Botanist in 1847-1849, and also on the Bangor Natural History Society. There are materials on Brazil in relation to Young's service there as the U.S. consul to Rio Grande do Sul from 1863 to 1873. There are also letters from his brother, John C. Young, and his sister, Sarah Augusta Young.

The correspondence is principally to Zaccheus Collins (1810-1840), with bills, receipts, and notes on Rafinesque vs. Parker; letters from Collins, L.A. Tarascon, Lewis C. Beck, John Torrey, and Charles W. Short (1817-1835); and miscellaneous correspondence and documents relating to Rafinesque vs. Parker, with an account of the Felician Society of Feliciana County, Illinois (1820). The writings are chiefly on botanical topics, and include notes and essays on Indians, Blacks, grapes and wine-making, banking, and speculation. Rafinesque's growing interest in Indian antiquities, linguistics, and history is apparent in letters after 1820. There is an account of Rafinesque's scientific travels in North America and southern Europe (1800-1832), and a bibliography. The botanical notes include descriptions of specimens collected by Lewis and Clark, Patrick Gass, and Henry Muhlenberg.

This collection includes letters from, and drafts of letters to, scientists, artists, musicians, soldiers, political figures, and court personages throughout Europe, especially Italy and France. Topics covered range from personal and social affairs to agriculture, botany, geology, natural history, coinage, museum management, politics, weights and measures, current affairs. The collection also includes four diaries, housed separately with manuscript volumes.